mdp Options 107 topics

Simulation parameters for Martini simulations.

Subject	Replies / Views	Last Post
How to add scaling factor for protein−lipid Lennard−Jones interaction. Topic started 1 month 3 weeks ago, by Saman Fatihi Last Post 1 month 3 weeks ago by Saman Fatihi	Replies:0 Views:484	Last Post by Saman Fatihi 1 month 3 weeks ago
Martini 3 not that stable with aromatic amino acids? Topic started 1 year 1 week ago, by congwang Last Post 11 months 1 week ago by pcmartini	Replies:2 Views:3140	Last Post by pcmartini 11 months 1 week ago
two vdw potential Topic started 1 year 5 months ago, by tarraga Last Post 1 year 5 months ago by tarraga	Replies:0 Views:1870	Last Post by tarraga 1 year 5 months ago
Martini3 protein simulation keeps crashing Topic started 1 year 7 months ago, by anjukris Last Post 1 year 7 months ago by anjukris	Replies:0 Views:1276	Last Post by anjukris 1 year 7 months ago
PME parameters: Based on "New" methodology Topic started 2 years 7 months ago, by peter Last Post 2 years 2 months ago by riccardo	Replies:6 Views:4703	Last Post by riccardo 2 years 2 months ago
Simulation in a vacuum for tweaking parameters Topic started 2 years 3 months ago, by roshan2004 Last Post 2 years 3 months ago by riccardo	Replies:1 Views:1434	Last Post by riccardo 2 years 3 months ago
Arbitrary distribution of electric field Topic started 2 years 3 months ago, by ncfm Last Post 2 years 3 months ago by riccardo	Replies:1 Views:1250	Last Post by riccardo 2 years 3 months ago
Martini 3: Recommended Simulation Parameters Topic started 2 years 5 months ago, by Luke Kruse Last Post 2 years 5 months ago by Luke Kruse	Replies:0 Views:2438	Last Post by Luke Kruse 2 years 5 months ago
choosing mdp file for lipid simulation Topic started 3 years 5 months ago, by shakira Last Post 2 years 7 months ago by saini	Replies:1 Views:3513	Last Post by saini 2 years 7 months ago
Using PME to Martini Topic started 2 years 7 months ago, by Jinyoung Last Post 2 years 7 months ago by Jinyoung	Replies:0 Views:1456	Last Post by Jinyoung 2 years 7 months ago
How can I accelerate MD simulation with Martini force field? Topic started 2 years 8 months ago, by Jinyoung Last Post 2 years 8 months ago by Jinyoung	Replies:0 Views:1674	Last Post by Jinyoung 2 years 8 months ago
Warning oscillational period with Elnedyn Topic started 2 years 10 months ago, by moon Last Post 2 years 9 months ago by SophieKing	Replies:2 Views:1874	Last Post by SophieKing 2 years 9 months ago
ELNeDyn remove elastic constraints from select residues Topic started 3 years 5 months ago, by drewaight Last Post 2 years 10 months ago by riccardo	Replies:1 Views:2019	Last Post by riccardo 2 years 10 months ago
LINCS error Topic started 3 years 9 months ago, by mw00847 Last Post 2 years 11 months ago by riccardo	Replies:5 Views:5218	Last Post by riccardo 2 years 11 months ago
Lincs warning for protein-membrane system Topic started 3 years 1 month ago, by mpandey Last Post 3 years 1 month ago by mpandey	Replies:2 Views:2231	Last Post by mpandey 3 years 1 month ago
PME, PBC, and pressure mdp settings for a 2D polarized MARTINI simulation Topic started 3 years 8 months ago, by mboy@seas.upenn.edu Last Post 3 years 7 months ago by mboy@seas.upenn.edu	Replies:2 Views:2497	Last Post by mboy@seas.upenn.edu 3 years 7 months ago
minimization-vac.mdp Topic started 4 years 3 months ago, by imankatouzian Last Post 3 years 8 months ago by brajk	Replies:4 Views:3306	Last Post by brajk 3 years 8 months ago
Protein breaking up with extended bonds Topic started 3 years 10 months ago, by darrenphua Last Post 3 years 9 months ago by darrenphua	Replies:2 Views:2447	Last Post by darrenphua 3 years 9 months ago
Segmentation faults - core dumped error Topic started 3 years 11 months ago, by gypsy Last Post 3 years 11 months ago by gypsy	Replies:4 Views:2420	Last Post by gypsy 3 years 11 months ago
How to choose the value of compressibility? Topic started 3 years 11 months ago, by sagar Last Post 3 years 11 months ago by sagar	Replies:0 Views:2126	Last Post by sagar 3 years 11 months ago

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General Purpose Coarse-Grained Force Field

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mdp Options 107 topics