Tools 312 topics

Scripts, programs and software to use with Martini simulations.

Subject	Replies / Views	Last Post
Visualising a CG lipid (RAMP LPS) in VMD one atom appears twice in list Topic started 1 week 4 days ago, by anna_banana Last Post 1 week 4 days ago by anna_banana	Replies:1 Views:138	Last Post by anna_banana 1 week 4 days ago
Martinizing a solvated phospholipid bilayer system Topic started 2 months 2 weeks ago, by SinaSina92 Last Post 2 months 1 week ago by bart	Replies:1 Views:936	Last Post by bart 2 months 1 week ago
P2 order parameter analysis Topic started 4 months 1 week ago, by Junb Last Post 4 months 1 week ago by Junb	Replies:0 Views:629	Last Post by Junb 4 months 1 week ago
Go-MARTINI3 and protein protein interactions Topic started 7 months 1 week ago, by shaukat_i Last Post 6 months 3 weeks ago by adolfom	Replies:1 Views:899	Last Post by adolfom 6 months 3 weeks ago
cg_bonds script to back-map my trajectory Topic started 7 months 5 days ago, by anna_banana Last Post 7 months 5 days ago by anna_banana	Replies:0 Views:452	Last Post by anna_banana 7 months 5 days ago
Backmapping after Martini3 Topic started 7 months 6 days ago, by shaukat_i Last Post 7 months 6 days ago by shaukat_i	Replies:0 Views:437	Last Post by shaukat_i 7 months 6 days ago
Sphingomyelin and other lipids in insane.py? Topic started 8 years 11 months ago, by gpantel Last Post 8 months 2 weeks ago by zwy	Replies:4 Views:9176	Last Post by zwy 8 months 2 weeks ago
Truncated heavy chains on antibody using martinize.py Topic started 8 months 3 weeks ago, by amjadkchy Last Post 8 months 3 weeks ago by amjadkchy	Replies:0 Views:423	Last Post by amjadkchy 8 months 3 weeks ago
Martinize2 error in building the system Topic started 8 months 3 weeks ago, by kesavan Last Post 8 months 3 weeks ago by kesavan	Replies:0 Views:365	Last Post by kesavan 8 months 3 weeks ago
Martinize2 error - Building system for 100 chains Topic started 9 months 2 weeks ago, by kesavan Last Post 9 months 2 weeks ago by kesavan	Replies:2 Views:580	Last Post by kesavan 9 months 2 weeks ago
Backward mapping fails with index out of range error Topic started 10 months 3 weeks ago, by khZhang Last Post 10 months 3 weeks ago by khZhang	Replies:0 Views:602	Last Post by khZhang 10 months 3 weeks ago
Backmapping multiple chain systems leads to broken molecules Topic started 1 year 2 weeks ago, by amin_sagar Last Post 1 year 2 weeks ago by amin_sagar	Replies:0 Views:903	Last Post by amin_sagar 1 year 2 weeks ago
Martini & gmx energy Topic started 1 year 2 months ago, by peter Last Post 1 year 2 months ago by peter	Replies:0 Views:987	Last Post by peter 1 year 2 months ago
Looking for charmm AA cholesterol structure matching backward map file Topic started 4 years 2 months ago, by cneale Last Post 1 year 3 months ago by moon	Replies:5 Views:2998	Last Post by moon 1 year 3 months ago
Martinizing cofactors Topic started 1 year 3 months ago, by marcol Last Post 1 year 3 months ago by marcol	Replies:0 Views:758	Last Post by marcol 1 year 3 months ago
initram.sh dependecy error Topic started 1 year 3 months ago, by omkar73 Last Post 1 year 3 months ago by riccardo	Replies:3 Views:761	Last Post by riccardo 1 year 3 months ago
Assignment between atoms and CG beads Topic started 1 year 3 months ago, by FJSP22 Last Post 1 year 3 months ago by FJSP22	Replies:0 Views:646	Last Post by FJSP22 1 year 3 months ago
cg_bonds-v5.tcl Topic started 2 years 6 months ago, by JBinder Last Post 1 year 5 months ago by morris	Replies:7 Views:2784	Last Post by morris 1 year 5 months ago
martinize2 does not recognize RNAs residues Topic started 1 year 5 months ago, by willyef Last Post 1 year 5 months ago by fgrunewald	Replies:1 Views:839	Last Post by fgrunewald 1 year 5 months ago
Martinize trajectory? Topic started 1 year 5 months ago, by mason Last Post 1 year 5 months ago by riccardo	Replies:1 Views:684	Last Post by riccardo 1 year 5 months ago

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Tools 312 topics